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Logs Viewer
Example Log Output
When running the full version of Geona Hyperspectral you will have full access to a detailed log file which provides an in-depth view of progress as the processing is underway. The log file below is an example of what you could expect to see when not running in trial mode
Log File: geona_hyperspectral.log
2023-12-08 14:59:21,713 INFO Pre-flight checks... 2023-12-08 14:59:21,713 INFO Running time check 2023-12-08 14:59:21,736 INFO NTP server datetime : Fri Dec 8 14:59:21 2023 2023-12-08 14:59:21,737 INFO System datetime : Fri Dec 08 14:59:21 2023 2023-12-08 14:59:21,739 INFO Offset in seconds : -0.736935 2023-12-08 14:59:21,740 INFO Passed 2023-12-08 14:59:21,740 INFO ------ 2023-12-08 14:59:21,740 INFO Running version check 2023-12-08 14:59:21,740 INFO Geona Hyperspectral version 0.11.3 2023-12-08 14:59:21,791 INFO Passed 2023-12-08 14:59:21,791 INFO ------ 2023-12-08 14:59:21,791 INFO Running filesystem check 2023-12-08 14:59:21,791 INFO Available disk space in '/opt/geona/data': 684GB 2023-12-08 14:59:21,791 INFO Passed 2023-12-08 14:59:21,791 INFO ------ 2023-12-08 14:59:21,792 INFO Launching Geona Hyperspectral Dashboard 2023-12-08 15:00:35,950 INFO Validation for Job ID '7fb9b358' passed 2023-12-08 15:00:35,950 INFO saving config file as: '/opt/geona/data/configs/geona_hyperspectral_config_afx17_2023-12-08-150035.ini' 2023-12-08 15:00:35,951 INFO Loading config from file: '/opt/geona/data/configs/geona_hyperspectral_config_afx17_2023-12-08-150035.ini' 2023-12-08 15:00:35,952 INFO Validation for Job ID '7fb9b358' passed 2023-12-08 15:00:35,952 INFO Valid config returned 2023-12-08 15:00:35,952 INFO Processing Started.... 2023-12-08 15:00:35,953 INFO Processing Job ID: 7fb9b358 2023-12-08 15:00:35,953 INFO Creating workspace directory in '/opt/geona/data/workspace/7fb9b358' 2023-12-08 15:00:35,953 INFO Copying configuration file to workspace: '/opt/geona/data/workspace/7fb9b358/config_7fb9b358.ini' 2023-12-08 15:00:35,955 INFO Creating job status file: '/opt/geona/data/workspace/7fb9b358/status_7fb9b358.json' 2023-12-08 15:00:35,955 INFO Step 2 of 16 - LICENCE_CHECK: Checking for a valid licence file 2023-12-08 15:00:35,955 INFO Requesting licence 2023-12-08 15:00:36,088 INFO Licence owner : PML Applications 2023-12-08 15:00:36,100 INFO NTP server time : Fri Dec 8 15:00:36 2023 2023-12-08 15:00:36,100 INFO Not valid before : Thu Dec 7 15:00:36 2023 2023-12-08 15:00:36,101 INFO Not valid after : Sun Jan 7 15:00:36 2024 2023-12-08 15:00:36,111 INFO Step 3 of 16 - WRITE_TEST: Testing write permissions on the output location 2023-12-08 15:00:36,111 INFO Testing local write permission... 2023-12-08 15:00:36,112 INFO Passed: target destination is writable 2023-12-08 15:00:36,112 INFO Step 4 of 16 - DOWNLOAD_INPUTS: Gathering input files to the workspace directory from their original location 2023-12-08 15:00:36,112 INFO '/opt/geona/data/input/day2_f3_20200924_080555/capture/day2_f3_20200924_080555.raw' symlinked to workspace 2023-12-08 15:00:36,112 INFO '/opt/geona/data/input/day2_f3_20200924_080555/capture/day2_f3_20200924_080555.hdr' symlinked to workspace 2023-12-08 15:00:36,112 INFO '/opt/geona/data/input/day2_f3_20200924_080555/capture/day2_f3_20200924_080555.nav' symlinked to workspace 2023-12-08 15:00:36,112 INFO '/opt/geona/data/input/day2_f3_20200924_080555/capture/day2_f3_20200924_080555.log' symlinked to workspace 2023-12-08 15:00:36,113 INFO '/opt/geona/data/input/day2_f3_20200924_080555/calibrations/radiometric/day2_f3_20200924_080555.cal' symlinked to workspace 2023-12-08 15:00:36,113 INFO '/opt/geona/data/input/day2_f3_20200924_080555/calibrations/radiometric/day2_f3_20200924_080555.hdr' symlinked to workspace 2023-12-08 15:00:36,113 INFO '/opt/geona/data/input/Keskuspuisto-2009/Parameters/FOV_AFX17_sn2100014_20200429_1b.txt' symlinked to workspace 2023-12-08 15:00:36,113 INFO Step 5 of 16 - CONVERT_NAV_FORMAT: Converting navigation data to a suitable format 2023-12-08 15:00:36,113 INFO Step 6 of 16 - CONVERT_VIEW_VECTOR_FORMAT: Converting view vectors to binary format 2023-12-08 15:00:36,130 INFO Binning value read from hdr file as: ['1'] 2023-12-08 15:00:36,144 INFO Step 7 of 16 - CALIBRATION: Running calibration operation 2023-12-08 15:00:36,145 WARNING No bad pixel file supplied with calibration, assuming no bad pixels 2023-12-08 15:00:36,157 INFO Reading command line and sorting options. 2023-12-08 15:00:36,157 INFO Operating system: Linux Release: 5.15.0-86-generic Version: #96~20.04.1-Ubuntu SMP Thu Sep 21 13:23:37 UTC 2023 2023-12-08 15:00:36,157 INFO Machine information: x86_64 Host name: 2ced290e82a3 Domain name: (none) 2023-12-08 15:00:36,157 INFO Sensor has no FODIS region defined. 2023-12-08 15:00:36,157 INFO Log file exists /opt/geona/data/workspace/7fb9b358/capture/day2_f3_20200924_080555.log - will use this for finding dropped scans. 2023-12-08 15:00:36,157 INFO AFX17 sensor detected - created AFX17 object. 2023-12-08 15:00:36,157 INFO Sensor has no FODIS region defined. 2023-12-08 15:00:36,157 INFO Log file exists /opt/geona/data/workspace/7fb9b358/capture/day2_f3_20200924_080555.log - will use this for finding dropped scans. 2023-12-08 15:00:36,157 INFO Total number of missing frames are: 0 2023-12-08 15:00:36,158 INFO Reading calibration file: /opt/geona/data/workspace/7fb9b358/calibration/day2_f3_20200924_080555.cal 2023-12-08 15:00:36,158 INFO ---------- WARNING ---------- 2023-12-08 15:00:36,158 INFO Note that integration time of calibration file is ignored - assume it relates to a value of 1.0. 2023-12-08 15:00:36,158 INFO ---------- ------- ---------- 2023-12-08 15:00:36,158 INFO Calibration file contains: 640 samples, 1 lines and 112 bands. 2023-12-08 15:00:36,158 INFO Checking calibration wavelengths for subsensor: 0 2023-12-08 15:00:36,160 INFO There are 112 bands in (binned) calibration file whose centre wavelengths agree with the raw image. 2023-12-08 15:00:36,160 INFO Starting dark frame analysis... 2023-12-08 15:00:36,439 INFO Finished dark frame analysis for sensor index 0 ... 2023-12-08 15:00:36,439 INFO Will read in bad pixels from: /opt/geona/data/workspace/7fb9b358/calibration/day2_f3_20200924_080555.bad 2023-12-08 15:00:36,439 INFO Detected ARSF calibrated bad pixel file. 2023-12-08 15:00:36,439 INFO Will create method descriptors: 7 2023-12-08 15:00:36,439 INFO methodA = ConstantLightInconstantResponse. Data for given pixel varies greater than given threshold. Thresholds=./bad_pixels_tools_and_conf/nofilter-swir: 10.0, ./bad_pixels_tools_and_conf/nofilter-vnir: 10.0 2023-12-08 15:00:36,439 INFO methodB = DeviationFromSpectralAndSpatialNeighbours. Data for given pixel varies from spectral and spatial neighbours greater than given threshold. (spectral, spatial)=./bad_pixels_tools_and_conf/nofilter-swir: (3, 10), ./bad_pixels_tools_and_conf/nofilter-vnir: (3, 10). Threshold=./bad_pixels_tools_and_conf/nofilter-swir: 20.0, ./bad_pixels_tools_and_conf/nofilter-vnir: 10.0 2023-12-08 15:00:36,439 INFO methodC = LinearInputNonLinearResponse. Correlation of pixel integration time against data value is less than given threshold. Threshold=./bad_pixels_tools_and_conf/nofilter-swir: 0.9825, ./bad_pixels_tools_and_conf/nofilter-vnir: 0.9825 2023-12-08 15:00:36,440 INFO methodD = RapidSaturation. Correlation of pixel integration time against data value varies from spectral and spatial neighbours greater than given threshold. ./bad_pixels_tools_and_conf/nofilter-swir: (1, 18), ./bad_pixels_tools_and_conf/nofilter-vnir: (1, 18). Threshold=./bad_pixels_tools_and_conf/nofilter-swir: 3.0, ./bad_pixels_tools_and_conf/nofilter-vnir: 3.0 2023-12-08 15:00:36,440 INFO methodE = ManualDetection. Manual detection of bad pixels from level 1 test set. 2023-12-08 15:00:36,440 INFO methodF = LowResponse. If the average spectral response of the band is less than a threshold %% of the average maximum response for the sensor. Threshold=./bad_pixels_tools_and_conf/nofilter-swir: 0.3, ./bad_pixels_tools_and_conf/nofilter-vnir: 0.1 2023-12-08 15:00:36,440 INFO methodG = Identified from BPR file acquired at data collection. 2023-12-08 15:00:36,440 INFO Number of bad pixels decoded from file: 0 2023-12-08 15:00:36,440 INFO Number of frames of image (minus dark frames) should be: 1818 2023-12-08 15:00:36,440 INFO Number of dark frames is: 99 2023-12-08 15:00:36,440 INFO Number of missing frames is: 0 2023-12-08 15:00:36,440 INFO Number of frames in final calibrated image will be: 1818 2023-12-08 15:00:36,440 INFO Number of samples in final calibrated image will be: 640 2023-12-08 15:00:36,440 INFO The job will complete the following tasks: 2023-12-08 15:00:36,440 INFO Remove dark frames: 1 2023-12-08 15:00:36,440 INFO Calibrate FODIS (if exists): 0 2023-12-08 15:00:36,440 INFO Insert missing scans as line of 0's: 1 2023-12-08 15:00:36,440 INFO Apply radiometric gains: 1 2023-12-08 15:00:36,440 INFO Smear correct the data (if Eagle): 0 2023-12-08 15:00:36,440 INFO Output the mask file: 1 2023-12-08 15:00:36,440 INFO Output the mask method file: 1 2023-12-08 15:00:36,440 INFO Flip the raw data spectrally (red to blue): 0 2023-12-08 15:00:36,441 INFO Flip the raw data spatially (left to right): 0 2023-12-08 15:00:36,441 INFO Apply QC failure bad pixels: 0 2023-12-08 15:00:36,462 INFO Will bin calibration file so that it has 112 bands and 640 samples. 2023-12-08 15:00:36,462 INFO ---------- WARNING ---------- 2023-12-08 15:00:36,462 INFO INFO: Using the averaging method for binning - this is used for most of the 'modern' sensors. 2023-12-08 15:00:36,462 INFO ---------- ------- ---------- 2023-12-08 15:00:36,469 INFO Will trim calibration file so that it has 112 bands and 640 samples. 2023-12-08 15:00:36,470 INFO Will write calibrated image data to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil 2023-12-08 15:00:36,470 INFO Will write calibrated image mask data to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil 2023-12-08 15:00:36,470 INFO Will write bad pixel method data to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask-badpixelmethod.bil 2023-12-08 15:00:36,956 INFO Approximate percent complete: 10 at line 180 2023-12-08 15:00:37,461 INFO Approximate percent complete: 20 at line 361 2023-12-08 15:00:38,026 INFO Approximate percent complete: 30 at line 542 2023-12-08 15:00:38,608 INFO Approximate percent complete: 40 at line 723 2023-12-08 15:00:39,281 INFO Approximate percent complete: 50 at line 904 2023-12-08 15:00:39,872 INFO Approximate percent complete: 60 at line 1085 2023-12-08 15:00:40,445 INFO Approximate percent complete: 70 at line 1266 2023-12-08 15:00:41,066 INFO Approximate percent complete: 80 at line 1447 2023-12-08 15:00:41,590 INFO Approximate percent complete: 90 at line 1628 2023-12-08 15:00:42,065 INFO Approximate percent complete: 100 at line 1809 2023-12-08 15:00:42,083 INFO Calibration processing completed. 2023-12-08 15:00:42,084 INFO Processing completed successfully 2023-12-08 15:00:42,084 INFO Calibration successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil' 2023-12-08 15:00:42,084 INFO Step 8 of 16 - MASKING: Running masking operation 2023-12-08 15:00:42,093 INFO Will use input Level-1 BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil 2023-12-08 15:00:42,093 INFO Will write masked data to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil 2023-12-08 15:00:42,093 INFO Will use input mask BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil 2023-12-08 15:00:42,093 INFO Will flag all pixels which are not good (have non-zero value in mask file). 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 0 equivalent to value: 1 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 1 equivalent to value: 2 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 2 equivalent to value: 4 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 3 equivalent to value: 8 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 4 equivalent to value: 16 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 5 equivalent to value: 32 2023-12-08 15:00:42,094 INFO Will test against mask bit position: 6 equivalent to value: 64 2023-12-08 15:00:42,257 INFO Approximate percent complete: 10 at line 180 2023-12-08 15:00:42,349 INFO Approximate percent complete: 20 at line 361 2023-12-08 15:00:42,441 INFO Approximate percent complete: 30 at line 542 2023-12-08 15:00:42,536 INFO Approximate percent complete: 40 at line 723 2023-12-08 15:00:42,671 INFO Approximate percent complete: 50 at line 904 2023-12-08 15:00:42,777 INFO Approximate percent complete: 60 at line 1085 2023-12-08 15:00:42,883 INFO Approximate percent complete: 70 at line 1266 2023-12-08 15:00:42,975 INFO Approximate percent complete: 80 at line 1447 2023-12-08 15:00:43,075 INFO Approximate percent complete: 90 at line 1628 2023-12-08 15:00:43,174 INFO Approximate percent complete: 100 at line 1809 2023-12-08 15:00:43,178 INFO Processing completed successfully 2023-12-08 15:00:43,179 INFO Masking successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil' 2023-12-08 15:00:43,179 INFO Step 9 of 16 - NAVIGATION: Running navigation operation 2023-12-08 15:00:43,187 INFO Operating system: Linux Release: 5.15.0-86-generic Version: #96~20.04.1-Ubuntu SMP Thu Sep 21 13:23:37 UTC 2023 2023-12-08 15:00:43,187 INFO Machine information: x86_64 Host name: 2ced290e82a3 Domain name: (none) 2023-12-08 15:00:43,187 INFO Will use Specim Navigation file: /opt/geona/data/workspace/7fb9b358/capture/day2_f3_20200924_080555.nav 2023-12-08 15:00:43,187 INFO Will write to output BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil 2023-12-08 15:00:43,187 INFO Will read the sensor data properties from the level-1 file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil 2023-12-08 15:00:43,187 INFO Will apply lever arm corrections of (X,Y,Z): 0 0 0 2023-12-08 15:00:43,187 INFO Will apply boresight corrections of (R,P,H): 0 0 0 2023-12-08 15:00:43,188 INFO No SBET/SOL file has been given, therefore will read real-time navigation data from Specim .nav file: /opt/geona/data/workspace/7fb9b358/capture/day2_f3_20200924_080555.nav 2023-12-08 15:00:43,188 INFO No user-supplied scan time offset to be applied. 2023-12-08 15:00:43,188 INFO No smoothing of navigation data to be applied. 2023-12-08 15:00:43,188 INFO Will use the interpolation method: Linear 2023-12-08 15:00:43,188 INFO Will not use a position-attitude offset. 2023-12-08 15:00:43,188 INFO Will use the given nav system: AppPos 2023-12-08 15:00:43,205 INFO ---------- WARNING ---------- 2023-12-08 15:00:43,205 INFO There are no SPTSMP2 sync messages in this .nav file - will try to use SPTSMP instead. 2023-12-08 15:00:43,205 INFO ---------- ------- ---------- 2023-12-08 15:00:43,219 INFO Height difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,219 INFO Latitude difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,219 INFO Longitude difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,219 INFO Roll difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,219 INFO Pitch difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,219 INFO Heading difference between consecutive epochs larger than acceptable threshold. Further warnings of this type suppressed. 2023-12-08 15:00:43,219 INFO Start and end times of file: Type 17NMEASpecimNavData 371221 371253 2023-12-08 15:00:43,219 INFO Number of scans: 1818 2023-12-08 15:00:43,219 INFO Sync from header:-999 2023-12-08 15:00:43,219 INFO Date: 2020-09-24 2023-12-08 15:00:43,219 INFO Frame rate from header:69.99 2023-12-08 15:00:43,219 INFO Using cropped level-1 data - will add a time offset relating to number of lines cropped (y start + dropped scans values in hdr): 0 2023-12-08 15:00:43,219 INFO Leap second data value 2006-01-01 14 2023-12-08 15:00:43,219 INFO Leap second data value 2009-01-01 15 2023-12-08 15:00:43,220 INFO Leap second data value 2012-07-01 16 2023-12-08 15:00:43,220 INFO Leap second data value 2015-07-01 17 2023-12-08 15:00:43,220 INFO Leap second data value 2017-01-01 18 2023-12-08 15:00:43,220 INFO Using leap seconds of:18 2023-12-08 15:00:43,220 INFO Finding per-scan times... 2023-12-08 15:00:43,220 INFO Running new-style scan syncer function without level-1 header start time. 2023-12-08 15:00:43,220 INFO sync time: 0.9876 sync_gps: 371224 frame: 0 2023-12-08 15:00:43,220 INFO sync time: 0.9875 sync_gps: 371225 frame: 70 2023-12-08 15:00:43,220 INFO sync time: 0.9873 sync_gps: 371226 frame: 140 2023-12-08 15:00:43,220 INFO sync time: 0.9871 sync_gps: 371227 frame: 210 2023-12-08 15:00:43,220 INFO sync time: 0.987 sync_gps: 371228 frame: 280 2023-12-08 15:00:43,220 INFO sync time: 0.9868 sync_gps: 371229 frame: 350 2023-12-08 15:00:43,220 INFO sync time: 0.9867 sync_gps: 371230 frame: 420 2023-12-08 15:00:43,220 INFO sync time: 0.9865 sync_gps: 371231 frame: 490 2023-12-08 15:00:43,220 INFO sync time: 0.9864 sync_gps: 371232 frame: 560 2023-12-08 15:00:43,220 INFO sync time: 0.9862 sync_gps: 371233 frame: 630 2023-12-08 15:00:43,220 INFO sync time: 0.986 sync_gps: 371234 frame: 700 2023-12-08 15:00:43,220 INFO sync time: 0.9859 sync_gps: 371235 frame: 770 2023-12-08 15:00:43,220 INFO sync time: 0.9857 sync_gps: 371236 frame: 840 2023-12-08 15:00:43,220 INFO sync time: 0.9999 sync_gps: 371237 frame: 909 2023-12-08 15:00:43,220 INFO sync time: 0.9997 sync_gps: 371238 frame: 979 2023-12-08 15:00:43,221 INFO sync time: 0.9995 sync_gps: 371239 frame: 1049 2023-12-08 15:00:43,221 INFO sync time: 0.9994 sync_gps: 371240 frame: 1119 2023-12-08 15:00:43,221 INFO sync time: 0.9992 sync_gps: 371241 frame: 1189 2023-12-08 15:00:43,221 INFO sync time: 0.9991 sync_gps: 371242 frame: 1259 2023-12-08 15:00:43,221 INFO sync time: 0.9989 sync_gps: 371243 frame: 1329 2023-12-08 15:00:43,221 INFO sync time: 0.9988 sync_gps: 371244 frame: 1399 2023-12-08 15:00:43,221 INFO sync time: 0.9986 sync_gps: 371245 frame: 1469 2023-12-08 15:00:43,221 INFO sync time: 0.9984 sync_gps: 371246 frame: 1539 2023-12-08 15:00:43,221 INFO sync time: 0.9983 sync_gps: 371247 frame: 1609 2023-12-08 15:00:43,221 INFO sync time: 0.9981 sync_gps: 371248 frame: 1679 2023-12-08 15:00:43,221 INFO sync time: 0.998 sync_gps: 371249 frame: 1749 2023-12-08 15:00:43,221 INFO Using the per second sync messages in this specim nav file. 2023-12-08 15:00:43,221 INFO First sync delay value: 0.9876 2023-12-08 15:00:43,221 INFO Time for first scanline (no adjustments made): 371224 2023-12-08 15:00:43,221 INFO Time for first scanline (adjusted for sync message): 371223.0124 2023-12-08 15:00:43,221 INFO Applying crop time offset of: 0 2023-12-08 15:00:43,221 INFO Time for first scanline (adjusted for croptime): 371223.0124 2023-12-08 15:00:43,221 INFO Time for first scanline (adjusted for frame grabber delay): 371223.0124 2023-12-08 15:00:43,221 INFO First scan will have time: 371223.0124. Last scan will have time: 371248.9736 2023-12-08 15:00:43,221 INFO Not applying leapsecond offset to SPECIM nav data. 2023-12-08 15:00:43,221 INFO Creating Navigation Interpolation object... 2023-12-08 15:00:43,221 INFO Detected this file as Specim nav as it failed sbet and sol tests: /opt/geona/data/workspace/7fb9b358/capture/day2_f3_20200924_080555.nav 2023-12-08 15:00:43,240 INFO ---------- WARNING ---------- 2023-12-08 15:00:43,240 INFO There are no SPTSMP2 sync messages in this .nav file - will try to use SPTSMP instead. 2023-12-08 15:00:43,240 INFO ---------- ------- ---------- 2023-12-08 15:00:43,267 INFO ---------- WARNING ---------- 2023-12-08 15:00:43,267 INFO There are no SPTSMP2 sync messages in this .nav file - will try to use SPTSMP instead. 2023-12-08 15:00:43,267 INFO ---------- ------- ---------- 2023-12-08 15:00:43,281 INFO Height difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,281 INFO Latitude difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,281 INFO Longitude difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,281 INFO Roll difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,281 INFO Pitch difference between consecutive epochs larger than acceptable threshold. Further warnings of this type supressed. 2023-12-08 15:00:43,281 INFO Heading difference between consecutive epochs larger than acceptable threshold. Further warnings of this type suppressed. 2023-12-08 15:00:43,281 INFO Start and end times of file: Type 17NMEASpecimNavData 371221 371253 2023-12-08 15:00:43,282 INFO Setting times to interpolation object... 2023-12-08 15:00:43,282 INFO Interpolating navigation data to scan times... 2023-12-08 15:00:43,283 INFO Adding leverarm correction... 2023-12-08 15:00:43,284 INFO Adding boresight correction... 2023-12-08 15:00:43,284 INFO Checking plausibilty of the interpolated data... 2023-12-08 15:00:43,284 INFO Writing data out... 2023-12-08 15:00:43,285 INFO Navigation processing completed. 2023-12-08 15:00:43,285 INFO Processing completed successfully 2023-12-08 15:00:43,286 INFO Navigation processing successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil' 2023-12-08 15:00:43,286 INFO Step 10 of 16 - GEOCORRECTION: Running geocorrection operation 2023-12-08 15:00:43,294 INFO Will use view vector file: /opt/geona/data/workspace/7fb9b358/auxilliary/FOV_AFX17_sn2100014_20200429_1b_converted.bil 2023-12-08 15:00:43,295 INFO Will use navigation data from file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil 2023-12-08 15:00:43,295 INFO Will apply default boresight corrections of (X,Y,Z): 0 0 0 2023-12-08 15:00:43,295 INFO Will write per-pixel positions (longitude,latitude,height) to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_latlon.igm 2023-12-08 15:00:43,295 INFO Using default Ellipsoid of WGS-84. 2023-12-08 15:00:43,295 INFO Will not add a height correction to the ellipsoid surface. 2023-12-08 15:00:43,295 INFO Will use default view vector method: split 2023-12-08 15:00:43,295 INFO Warning: No Digital Elevation Model given. Will map to Ellipsoid surface (+offset if given). 2023-12-08 15:00:43,295 INFO Will trim view vectors to fit the level 1 filename: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil 2023-12-08 15:00:43,295 INFO Creating view vector object. 2023-12-08 15:00:43,319 INFO Aircraft start position (Lon,Lat,Hei): 24.92437015 60.25899316 126.26 2023-12-08 15:00:43,319 INFO Aircraft navigation start time: 25641.0124 2023-12-08 15:00:43,319 INFO Aircraft end position (Lon,Lat,Hei): 24.92392881 60.26057459 126.83 2023-12-08 15:00:43,319 INFO Aircraft navigation end time: 25666.97361 2023-12-08 15:00:43,319 INFO Total number of navigation scan lines to map: 1818 2023-12-08 15:00:43,334 INFO Navigation Min/Max Latitude: 60.25899316 60.26057459 2023-12-08 15:00:43,334 INFO Navigation Min/Max Longitude: 24.92392881 24.92437015 2023-12-08 15:00:43,334 INFO Navigation Min/Max Height: 126.25 126.83 2023-12-08 15:00:43,334 INFO Navigation Min/Max Roll: -2.375583666 0.724204072 2023-12-08 15:00:43,334 INFO Warning - no Digital Elevation Model was given on command line. Will map to ellipsoid surface. 2023-12-08 15:00:43,334 INFO Creating an output file for a line scanner IGM. 2023-12-08 15:00:43,334 INFO Processing section with scan bounds: 0 : 1818 2023-12-08 15:00:43,399 INFO Approximate percent complete: 10 at line 180 2023-12-08 15:00:43,461 INFO Approximate percent complete: 20 at line 361 2023-12-08 15:00:43,525 INFO Approximate percent complete: 30 at line 542 2023-12-08 15:00:43,590 INFO Approximate percent complete: 40 at line 723 2023-12-08 15:00:43,657 INFO Approximate percent complete: 50 at line 904 2023-12-08 15:00:43,721 INFO Approximate percent complete: 60 at line 1085 2023-12-08 15:00:43,786 INFO Approximate percent complete: 70 at line 1266 2023-12-08 15:00:43,849 INFO Approximate percent complete: 80 at line 1447 2023-12-08 15:00:43,916 INFO Approximate percent complete: 90 at line 1628 2023-12-08 15:00:43,983 INFO Approximate percent complete: 100 at line 1809 2023-12-08 15:00:43,987 INFO Geocorrection processing completed. 2023-12-08 15:00:43,987 INFO Processing completed successfully 2023-12-08 15:00:43,987 INFO Georeferencing processing successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_latlon.igm' 2023-12-08 15:00:43,988 INFO Step 11 of 16 - TRANSFORMATION: Running transformation operation 2023-12-08 15:00:43,989 INFO Output reprojection will UTM WGS84 35 N (detected from navigation data) 2023-12-08 15:00:43,999 INFO Will use input IGM BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_latlon.igm 2023-12-08 15:00:43,999 INFO Will use output IGM BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_reprojected.igm 2023-12-08 15:00:43,999 INFO Will reproject data into UTM coordinate system: using Zone 35 North. Using code: EPSG:32635 2023-12-08 15:00:43,999 INFO PROJ format input projection string: EPSG:4326 2023-12-08 15:00:44,008 INFO PROJ format output projection string: EPSG:32635 2023-12-08 15:00:44,009 INFO Will use a 'no data value' of: -9999 2023-12-08 15:00:44,009 INFO Please note that Z values are not transformed and will remain in the input reference. 2023-12-08 15:00:44,076 INFO Approximate percent complete: 10 at line 180 2023-12-08 15:00:44,140 INFO Approximate percent complete: 20 at line 361 2023-12-08 15:00:44,202 INFO Approximate percent complete: 30 at line 542 2023-12-08 15:00:44,267 INFO Approximate percent complete: 40 at line 723 2023-12-08 15:00:44,330 INFO Approximate percent complete: 50 at line 904 2023-12-08 15:00:44,392 INFO Approximate percent complete: 60 at line 1085 2023-12-08 15:00:44,455 INFO Approximate percent complete: 70 at line 1266 2023-12-08 15:00:44,523 INFO Approximate percent complete: 80 at line 1447 2023-12-08 15:00:44,589 INFO Approximate percent complete: 90 at line 1628 2023-12-08 15:00:44,654 INFO Approximate percent complete: 100 at line 1809 2023-12-08 15:00:44,687 INFO Average nadir pixel sizes in along track, across track are: 0.1235367189 0.1318274931 2023-12-08 15:00:44,688 INFO Average nadir pixel sizes in projected X,Y are: 0.1406405885 0.1107110769 2023-12-08 15:00:44,688 INFO Coordinate Transformation Complete 2023-12-08 15:00:44,688 INFO Processing completed successfully 2023-12-08 15:00:44,691 INFO Coordinate transform processing successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_reprojected.igm' 2023-12-08 15:00:44,691 INFO Step 12 of 16 - MAPPING: Running mapping operation 2023-12-08 15:00:44,705 INFO Will use input IGM BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_reprojected.igm 2023-12-08 15:00:44,705 INFO Will use input Level-1 BIL file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil 2023-12-08 15:00:44,706 INFO Will use pixelsize: 1 1 2023-12-08 15:00:44,706 INFO Will map bands: ALL which sums to 1 group(s) of bands. 2023-12-08 15:00:44,706 INFO Will write map to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_mapped.bil 2023-12-08 15:00:44,706 INFO Will map using the interpolation algorithm defined by: nearest 2023-12-08 15:00:44,706 INFO Will assign a buffer size for input data of (MB): 1024 2023-12-08 15:00:44,706 INFO Will write out data as type: uint16. Note if writing as netcdf this will be ignored. 2023-12-08 15:00:44,706 INFO Will output Level-1 row/col mapping to file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_rowcol.bil 2023-12-08 15:00:44,706 INFO Will output latitude and longitude grids to: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_x.bil /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_y.bil 2023-12-08 15:00:44,706 INFO Will write data into a bil file. 2023-12-08 15:00:44,706 INFO Assuming a projected data set - not in latitude/longitude. Uses projection keyword in igm hdr and tests vs 'Geographic Lat/Lon'. 2023-12-08 15:00:44,725 INFO Average nadir pixel size East: 0.1406405885 North: 0.1107110769 2023-12-08 15:00:44,805 INFO Area defined by IGM file fits within rectangle: 385084.962 < X < 385192.0962 6682055.136 < Y < 6682239.661 2023-12-08 15:00:44,806 INFO Getting data type from file: /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil is 12 and converted to output FileWriter type is 2 2023-12-08 15:00:44,809 INFO Initialisation is now complete. Starting mapping ... 2023-12-08 15:00:44,810 INFO Number of rows, columns and bands of output mapped image file: 185 109 112 2023-12-08 15:00:44,810 INFO Final mapped image (if a BIL/BSQ file) /opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_mapped.bil will require 5 megabytes of disk space. 2023-12-08 15:00:44,810 INFO Total amount of disk space: 937795 2023-12-08 15:00:44,810 INFO Amount of free disk space available: 748037 2023-12-08 15:00:44,810 INFO Will use a default value for maximum interpolation of three times the average separation of a nadir pixel. This is: 0.5369641133 metres. 2023-12-08 15:00:44,810 INFO Interpolating level1 data ignoring values of: 0 This may be different to entered value as it has been cast to level-1 data type. 2023-12-08 15:00:44,838 INFO Either outline cannot be created from an IGM file not in ARSF style or use_outline set to false - faking outline to be the full size of the grid. 2023-12-08 15:00:45,349 INFO Approximate percent complete: 10 2023-12-08 15:00:45,362 INFO Approximate percent complete: 20 2023-12-08 15:00:45,383 INFO Approximate percent complete: 30 2023-12-08 15:00:45,397 INFO Approximate percent complete: 40 2023-12-08 15:00:45,411 INFO Approximate percent complete: 50 2023-12-08 15:00:45,428 INFO Approximate percent complete: 60 2023-12-08 15:00:45,445 INFO Approximate percent complete: 70 2023-12-08 15:00:45,463 INFO Approximate percent complete: 80 2023-12-08 15:00:45,479 INFO Approximate percent complete: 90 2023-12-08 15:00:45,497 INFO Approximate percent complete: 100 2023-12-08 15:00:45,527 INFO Processing completed successfully 2023-12-08 15:00:45,533 INFO Mapping successfully ran to produce '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_mapped.bil' 2023-12-08 15:00:45,533 INFO Step 13 of 16 - QUICKLOOK: Generating quicklook preview of mapped data 2023-12-08 15:00:45,582 INFO Input file size is 109, 185 2023-12-08 15:00:45,591 INFO 0...10...20...30...40...50...60...70...80...90...100 - done. 2023-12-08 15:00:45,594 INFO Step 14 of 16 - TRANSFER_RESULTS: Uploading results to output location 2023-12-08 15:00:45,732 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil' 2023-12-08 15:00:45,874 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask-badpixelmethod.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil_mask-badpixelmethod.bil' 2023-12-08 15:00:45,874 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask-badpixelmethod.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil_mask-badpixelmethod.bil.hdr' 2023-12-08 15:00:45,877 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_mapped.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_mapped.bil' 2023-12-08 15:00:45,877 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_y.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_grid_y.bil.hdr' 2023-12-08 15:00:46,135 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil' 2023-12-08 15:00:46,136 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_x.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_grid_x.bil' 2023-12-08 15:00:46,136 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_mapped.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_mapped.bil.hdr' 2023-12-08 15:00:46,136 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil.hdr' 2023-12-08 15:00:46,136 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_nav_post_processed.bil' 2023-12-08 15:00:46,136 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_rowcol.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_rowcol.bil' 2023-12-08 15:00:46,324 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_masked.bil' 2023-12-08 15:00:46,325 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_y.bil' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_grid_y.bil' 2023-12-08 15:00:46,325 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_ql.png' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_ql.png' 2023-12-08 15:00:46,344 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_latlon.igm' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_latlon.igm' 2023-12-08 15:00:46,344 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_grid_x.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_grid_x.bil.hdr' 2023-12-08 15:00:46,344 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_reprojected.igm.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_reprojected.igm.hdr' 2023-12-08 15:00:46,345 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_ql.png.aux.xml' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_ql.png.aux.xml' 2023-12-08 15:00:46,364 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_reprojected.igm' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_reprojected.igm' 2023-12-08 15:00:46,364 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_rowcol.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_rowcol.bil.hdr' 2023-12-08 15:00:46,364 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_masked.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_masked.bil.hdr' 2023-12-08 15:00:46,364 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil.hdr' 2023-12-08 15:00:46,364 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_latlon.igm.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_latlon.igm.hdr' 2023-12-08 15:00:46,365 INFO Output file '/opt/geona/data/workspace/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil.hdr' copied to '/opt/geona/data/outputs/7fb9b358/day2_f3_20200924_080555_level1.bil_mask.bil.hdr' 2023-12-08 15:00:46,365 INFO Output file '/opt/geona/data/workspace/7fb9b358/config_7fb9b358.ini' copied to '/opt/geona/data/outputs/7fb9b358/config_7fb9b358.ini' 2023-12-08 15:00:46,365 INFO Step 15 of 16 - CLEANUP: Cleaning up workspace 2023-12-08 15:00:46,366 INFO Step 16 of 16 - COMPLETE: Processing complete 2023-12-08 15:00:46,366 INFO Processing complete for Job ID: 7fb9b358 2023-12-08 15:00:46,377 INFO Output file '/opt/geona/data/workspace/7fb9b358/status_7fb9b358.json' copied to '/opt/geona/data/outputs/7fb9b358/status_7fb9b358.json' 2023-12-08 15:00:46,377 INFO Output file '/opt/geona/data/workspace/7fb9b358/job_id_7fb9b358.log' copied to '/opt/geona/data/outputs/7fb9b358/job_id_7fb9b358.log' 2023-12-08 15:00:46,418 INFO Processing complete